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#
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#               National Center for Biotechnology Information
#
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by_default: runtests

TOP ?= $(abspath ..)
MODULE = test

include $(TOP)/build/Makefile.shell

include $(TOP)/build/Makefile.config

#-------------------------------------------------------------------------------
# default
#
SUBDIRS =    \
	kdbmeta            \
	read-filter-redact \
	prefetch        \
	dump-test       \
	vdb-config      \
	vcf-loader      \
	align-info      \
	align-cache     \
	kar             \
	copycat         \
	sra-stat        \
	sra-sort        \
	sra-pileup      \
	fuse            \
	fastq-loader    \
	kget            \
	vdb-dump        \
	vdb-copy        \
	qual-recalib-stat \
	vdb-validate      \
	make-read-filter  \
	srapath           \
	scripts           \

# under construction
#    ngs-pileup      \

# common targets for non-leaf Makefiles; must follow a definition of SUBDIRS
include $(TOP)/build/Makefile.targets

$(SUBDIRS):
	@ $(MAKE) -C $@

.PHONY: default $(SUBDIRS)

#   time of slowtests in linux release mode
# real    4m 0.076s      user    4m22.256s      sys     0m10.707s     sra-sort
# real    5m21.151s      user    5m59.396s      sys     0m39.296s     fastdump
# real    6m55.921s      user    6m28.035s      sys     6m58.052s     sra-pileup
# real  184m21.347s      user   42m19.318s      sys   259m56.028s     fuse
